Clinical Data Engineer
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Cytovale
US
Summary
Develop and maintain ELT/ETL pipelines for EHR data while migrating structured data into data warehouses. Create dashboards to track clinical outcomes and ensure data integrity in compliance with HIPAA and PHI regulations.
Job Description
Purpose: The Clinical Data Engineer will be an individual contributor to the Medical Affairs department. The role will encompass the development and pipeline management and curation of clinical datasets for internal reports, external presentations, manuscripts and publications, and to inform future clinical trial design.
This is a remote role requiring valid work authorization in the U.S. without requiring employer sponsorship.
Responsibilities:
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Develop and maintain ELT/ETL pipelines for daily and weekly electronic health record (EHR) data extracts.
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Migrate structured CSV data into databases/data warehouse/data lake to enable efficient querying
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Develop dashboards for tracking the performance and effectiveness of the IntelliSep solution in improving clinical outcomes, operational efficiency, and financial performance and provide insights into customer-related metrics and the potential impact on patient outcomes and hospital reimbursement.
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Standardize tables and data artifacts towards a canonical data schema.
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Develop documentation and methodologies for infrastructure.
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Handle protected health information (PHI) and other sensitive clinical data in accordance with HIPAA and Cytovale's data privacy and security policies, ensuring data integrity, traceability, and appropriate access controls throughout the data pipeline.
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Maintain version control for code and data.
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Support quality improvement activities for customers by building systems and tools for post-implementation data analysis
Qualifications:
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Bachelor’s degree in computer science, electrical engineering, or related field.
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3+ years of industry related experience, ideally working with EHR or clinical data.
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Proficiency in Python, SQL, bash and Git
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Strong analytical skills with the ability to interpret and present data effectively.
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Familiarity with AWS, GCP, Azure, or other cloud computing providers (AWS preferred); experience with dbt, or similar transformation tools, is a plus.
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Working knowledge of HIPAA and PHI-handling requirements, with experience implementing data privacy, security, and integrity controls in a healthcare or clinical data environment.
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Candidate must be able to function as an individual contributor with minimal direct oversight.
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A passion for understanding complex issues with a data driven approach, experimenting and iterating on different ways to solve a problem.
Cytovale is a medical diagnostics company focused on providing a more rapid and insightful way to diagnose fast-moving and immune-mediated diseases. Our FDA cleared IntelliSep test is pioneering a new way of quickly and accurately analyzing white blood cells to stratify a patient’s risk of sepsis by performing a biomechanical evaluation of white blood cells collected from a standard blood draw in under 10 minutes.
Cytovale’s first market application will be for sepsis, one of the fastest-moving, most lethal conditions in the world. Sepsis, a dysregulated immune response to infection, is often difficult to quickly and accurately diagnose. Sepsis is the no. 1 cause of death in hospitals, taking the lives of 270,000 people every year in the U.S. – more than opioid overdoses, prostate cancer, and breast cancer combined. Mortality from sepsis increases as much as eight percent with every hour of delayed treatment, and as much as 80 percent of sepsis deaths could be prevented with rapid diagnosis and treatment, making early detection essential.
Cytovale aims to provide critical insight for early identification of patients at risk of having sepsis, in the time needed for it to be useful.
Follow us on Twitter: twitter.com/cytovale
Founded
2013
Company size
51-200 employees
Industry
Biotechnology Research
Org type
Privately Held
Headquarters
South San Francisco, California
Cytovale is a medical diagnostics company focused on providing a more rapid and insightful way to diagnose fast-moving and immune-mediated diseases. Our FDA cleared IntelliSep test is pioneering a new way of quickly and accurately analyzing white blood cells to stratify a patient’s risk of sepsis by performing a biomechanical evaluation of white blood cells collected from a standard blood draw in under 10 minutes.
Cytovale’s first market application will be for sepsis, one of the fastest-moving, most lethal conditions in the world. Sepsis, a dysregulated immune response to infection, is often difficult to quickly and accurately diagnose. Sepsis is the no. 1 cause of death in hospitals, taking the lives of 270,000 people every year in the U.S. – more than opioid overdoses, prostate cancer, and breast cancer combined. Mortality from sepsis increases as much as eight percent with every hour of delayed treatment, and as much as 80 percent of sepsis deaths could be prevented with rapid diagnosis and treatment, making early detection essential.
Cytovale aims to provide critical insight for early identification of patients at risk of having sepsis, in the time needed for it to be useful.
Follow us on Twitter: twitter.com/cytovale
Founded
2013
Company size
51-200 employees
Industry
Biotechnology Research
Org type
Privately Held
Headquarters
South San Francisco, California
